5GQS
NMR based solution structure of PTS system, galactitol-specific IIB component from methicillin resistant Staphylococcus aureus
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component | 95% H2O/5% D2O | 50 mM Sodium Phosphate, 50 mM NaCl mM | 6.9 | ambient | 298 | Bruker AVANCE 600 |
2 | 3D HNCACB | 11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component | 95% H2O/5% D2O | 50 mM Sodium Phosphate, 50 mM NaCl mM | 6.9 | ambient | 298 | Bruker AVANCE 600 |
3 | 3D HNCO | 11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component | 95% H2O/5% D2O | 50 mM Sodium Phosphate, 50 mM NaCl mM | 6.9 | ambient | 298 | Bruker AVANCE 600 |
4 | 3D 1H-15N NOESY | 11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component | 95% H2O/5% D2O | 50 mM Sodium Phosphate, 50 mM NaCl mM | 6.9 | ambient | 298 | Bruker AVANCE 600 |
5 | 3D 1H-13C NOESY aliphatic | 11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component | 95% H2O/5% D2O | 50 mM Sodium Phosphate, 50 mM NaCl mM | 6.9 | ambient | 298 | Bruker AVANCE 800 |
6 | 3D 1H-13C NOESY aromatic | 11.79 mg/mL 15N, 13C PTS system, galactitol-specific IIB component | 95% H2O/5% D2O | 50 mM Sodium Phosphate, 50 mM NaCl mM | 6.9 | ambient | 298 | Bruker AVANCE 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 600 |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Sparky | 3.114 | T. D. Goddard and D. G. Kneller |
5 | peak picking | Sparky | 3.114 | T. D. Goddard and D. G. Kneller |
2 | refinement | CYANA | 3.97 | Guntert, Mumenthaler and Wuthrich |
6 | data analysis | Sparky | 3.114 | T. D. Goddard and D. G. Kneller |
7 | processing | TopSpin | 3.5 | Bruker Biospin |
8 | collection | TopSpin | 3.2 | Bruker Biospin |
9 | structure calculation | CYANA | 3.97 | Guntert, Mumenthaler and Wuthrich |
10 | data analysis | CARA | 1.8.4.2 | Keller and Wuthrich |
11 | chemical shift assignment | CARA | 1.8.4.2 | Keller and Wuthrich |