X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2930.2M Calcium acetate, 0.1M Tris HCl pH 7.0, 16% PEG 1000
Crystal Properties
Matthews coefficientSolvent content
3.3963.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 137.367α = 90
b = 137.367β = 90
c = 200.854γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152014-06-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 5C (4A)1PAL/PLS5C (4A)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.215099.621.91596199

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2124.791142480699.690.193870.192070.22763RANDOM33.98
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.18-0.180.35
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.278
r_dihedral_angle_4_deg17.872
r_dihedral_angle_3_deg13.158
r_long_range_B_refined8.361
r_long_range_B_other8.337
r_dihedral_angle_1_deg6.322
r_scangle_other5.89
r_mcangle_it4.059
r_mcangle_other4.059
r_scbond_it3.819
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.278
r_dihedral_angle_4_deg17.872
r_dihedral_angle_3_deg13.158
r_long_range_B_refined8.361
r_long_range_B_other8.337
r_dihedral_angle_1_deg6.322
r_scangle_other5.89
r_mcangle_it4.059
r_mcangle_other4.059
r_scbond_it3.819
r_scbond_other3.818
r_mcbond_it2.858
r_mcbond_other2.858
r_angle_refined_deg1.739
r_angle_other_deg0.863
r_chiral_restr0.099
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9855
Nucleic Acid Atoms
Solvent Atoms589
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement