X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529122% PEG 4000, 200mM Li2SO4, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.3647.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 110.288α = 90
b = 73.786β = 113.39
c = 111.602γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6Mdynamically bendable mirror2012-06-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9692.796.90.0946.82.4116357234.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.962.0896.30.3472.522.4435910

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDBID 4JJ21.9659.87116357110537581899.130.222290.222290.219320.27854RANDOM36.086
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01-0.010.03-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.58
r_dihedral_angle_4_deg19.988
r_dihedral_angle_3_deg15.083
r_long_range_B_refined6.804
r_long_range_B_other6.804
r_dihedral_angle_1_deg6.532
r_scangle_other3.465
r_scbond_it2.312
r_scbond_other2.312
r_mcangle_it2.184
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.58
r_dihedral_angle_4_deg19.988
r_dihedral_angle_3_deg15.083
r_long_range_B_refined6.804
r_long_range_B_other6.804
r_dihedral_angle_1_deg6.532
r_scangle_other3.465
r_scbond_it2.312
r_scbond_other2.312
r_mcangle_it2.184
r_mcangle_other2.184
r_angle_refined_deg1.849
r_angle_other_deg1.491
r_mcbond_it1.459
r_mcbond_other1.458
r_chiral_restr0.112
r_bond_refined_d0.019
r_bond_other_d0.007
r_gen_planes_refined0.007
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12156
Nucleic Acid Atoms
Solvent Atoms638
Heterogen Atoms354

Software

Software
Software NamePurpose
PHASERphasing
REFMACrefinement
XDSdata reduction
XDSdata scaling