4LPU

Crystal structure of TENCON variant P40AR2-32R2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52930.1 M MES, pH 6.5, 25% PEG3000, 0.2 M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
359.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 84.73α = 90
b = 84.73β = 90
c = 127.44γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDRIGAKU SATURN 944VARIMAX HF2009-12-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.43093.80.10116.438223822-366.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.43.565.30.47512

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3TES3.4153603360316793.80.279970.279970.277480.33517RANDOM64.6
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.372.685.37-8.05
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it57.102
r_scbond_it42.878
r_dihedral_angle_2_deg38.983
r_dihedral_angle_3_deg20.47
r_dihedral_angle_4_deg8.585
r_dihedral_angle_1_deg6.746
r_mcangle_it1.753
r_angle_refined_deg1.266
r_mcbond_it0.905
r_chiral_restr0.077
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it57.102
r_scbond_it42.878
r_dihedral_angle_2_deg38.983
r_dihedral_angle_3_deg20.47
r_dihedral_angle_4_deg8.585
r_dihedral_angle_1_deg6.746
r_mcangle_it1.753
r_angle_refined_deg1.266
r_mcbond_it0.905
r_chiral_restr0.077
r_bond_refined_d0.009
r_gen_planes_refined
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1390
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
StructureStudiodata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
XDSdata scaling