4IUZ

High resolution crystal structure of racemic ester insulin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP3.62925 mg/mL protein, 0.05 M citric acid, 38% v/v PEG200, pH 3.6, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
1.6123.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 20.495α = 96.42
b = 27.757β = 98.6
c = 34.765γ = 104.46
Symmetry
Space GroupP -1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152011-11-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-E0.97921APS24-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.65089.30.04834.5495618573-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6485.30.4873.54.1384

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3E7Y1.633.95857242689.670.22220.22080.2495RANDOM29.4458
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.250.060.310.570.380.88
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.36
r_dihedral_angle_4_deg38.645
r_dihedral_angle_3_deg15.429
r_scangle_it8.212
r_dihedral_angle_1_deg6.66
r_scbond_it5.299
r_mcangle_it4.308
r_rigid_bond_restr2.874
r_mcbond_it2.626
r_angle_refined_deg2.036
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.36
r_dihedral_angle_4_deg38.645
r_dihedral_angle_3_deg15.429
r_scangle_it8.212
r_dihedral_angle_1_deg6.66
r_scbond_it5.299
r_mcangle_it4.308
r_rigid_bond_restr2.874
r_mcbond_it2.626
r_angle_refined_deg2.036
r_chiral_restr0.142
r_bond_refined_d0.023
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms402
Nucleic Acid Atoms
Solvent Atoms14
Heterogen Atoms20

Software

Software
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing