4HST
Crystal structure of a double mutant of a class III engineered cephalosporin acylase
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | 10-20% PEG8000, 10 mM Tris-HCl, pH 8.0-8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
3.04 | 59.52 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 68.385 | α = 90 |
b = 77.845 | β = 90 |
c = 191.99 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | ADSC QUANTUM 315r | 2009-03-28 | M | MAD |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 | 0.95663 | Australian Synchrotron | MX2 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 1.571 | 95.995 | 93.7 | 0.095 | 16.1 | 12 | 133919 | 133919 | 15.188 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||
X-RAY DIFFRACTION | MAD | THROUGHOUT | 1.571 | 95.995 | 127103 | 127103 | 6723 | 93.4 | 0.12145 | 0.12145 | 0.11931 | 0.16225 | RANDOM | 15.178 |
Temperature Factor Modeling | ||||||
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
-0.17 | 0.19 | -0.02 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_sphericity_free | 43.013 |
r_dihedral_angle_2_deg | 31.656 |
r_dihedral_angle_4_deg | 18.771 |
r_sphericity_bonded | 14.145 |
r_dihedral_angle_3_deg | 12.566 |
r_rigid_bond_restr | 7.343 |
r_dihedral_angle_1_deg | 6.124 |
r_angle_refined_deg | 2.22 |
r_chiral_restr | 0.298 |
r_bond_refined_d | 0.027 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 5751 |
Nucleic Acid Atoms | |
Solvent Atoms | 976 |
Heterogen Atoms | 10 |
Software
Software | |
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Software Name | Purpose |
Blu-Ice | data collection |
SHELXS | phasing |
REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |