X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52980.1 M KCl in Tris, 30%PEG 400, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.7254.84

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 133.802α = 90
b = 101.693β = 119.28
c = 77.421γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS HTCOsmic2007-08-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-D1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8648890.08310.12.7623136231328
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.861.9770.512.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2bup1.864862313329286.840.193250.190330.24751RANDOM21.868
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.161.21-0.690.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.707
r_dihedral_angle_4_deg16.583
r_dihedral_angle_3_deg13.834
r_dihedral_angle_1_deg5.823
r_scangle_it3.905
r_scbond_it2.532
r_angle_refined_deg1.618
r_mcangle_it1.4
r_mcbond_it0.808
r_nbtor_refined0.311
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.707
r_dihedral_angle_4_deg16.583
r_dihedral_angle_3_deg13.834
r_dihedral_angle_1_deg5.823
r_scangle_it3.905
r_scbond_it2.532
r_angle_refined_deg1.618
r_mcangle_it1.4
r_mcbond_it0.808
r_nbtor_refined0.311
r_symmetry_vdw_refined0.225
r_nbd_refined0.219
r_xyhbond_nbd_refined0.183
r_symmetry_hbond_refined0.164
r_chiral_restr0.093
r_bond_refined_d0.016
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5916
Nucleic Acid Atoms
Solvent Atoms808
Heterogen Atoms83

Software

Software
Software NamePurpose
StructureStudiodata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling