4G1A

Metal-binding properties of a self-assembled coiled coil: formation of a polynuclear Cd-thiolated cluster


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5293100mM HEPES pH 7.5 and 1.5-2.0M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.6826.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 30.762α = 90
b = 35.204β = 97.49
c = 64.123γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBRUKER SMART 6000Montel200 mirrorsMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8523.0596.20.0250.08742.955.8592657022218.85
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.91710.250.254.213.6449

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.8523.0534707470722383.230.194370.191330.25244RANDOM18.851
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.450.2-2.120.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg48.388
r_dihedral_angle_3_deg21.312
r_scangle_it7.848
r_dihedral_angle_1_deg5.236
r_scbond_it4.623
r_mcangle_it2.381
r_rigid_bond_restr2.203
r_angle_refined_deg1.786
r_mcbond_it1.349
r_chiral_restr0.114
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg48.388
r_dihedral_angle_3_deg21.312
r_scangle_it7.848
r_dihedral_angle_1_deg5.236
r_scbond_it4.623
r_mcangle_it2.381
r_rigid_bond_restr2.203
r_angle_refined_deg1.786
r_mcbond_it1.349
r_chiral_restr0.114
r_bond_refined_d0.021
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms567
Nucleic Acid Atoms
Solvent Atoms10
Heterogen Atoms4

Software

Software
Software NamePurpose
PROTEUM PLUSdata collection
SHELXSphasing
REFMACrefinement
SAINTdata reduction
SCALEPACKdata scaling