X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.52912 uL 0.1 M sodium phosphate, pH 5.5, 10% w/v PEG6000 + 2 uL 100 U/mL human insulin (Novolin R, lot # TS 62987), cryoprotectant: mother liquor + 10% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
1.8834.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.99α = 90
b = 81.99β = 90
c = 33.75γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2010-09-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE W01B-MX21.45860LNLSW01B-MX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.59140.99590.20.06511.63.21023910239
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.5911.6899.90.3540.3541.72.71679

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.59140.991023949690.20.14910.14510.2269RANDOM17.9006
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.050.020.05-0.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.332
r_dihedral_angle_4_deg13.831
r_dihedral_angle_3_deg12.594
r_dihedral_angle_1_deg7.206
r_scangle_it6.237
r_scbond_it4.517
r_mcangle_it2.868
r_rigid_bond_restr1.997
r_mcbond_it1.9
r_angle_refined_deg1.862
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.332
r_dihedral_angle_4_deg13.831
r_dihedral_angle_3_deg12.594
r_dihedral_angle_1_deg7.206
r_scangle_it6.237
r_scbond_it4.517
r_mcangle_it2.868
r_rigid_bond_restr1.997
r_mcbond_it1.9
r_angle_refined_deg1.862
r_angle_other_deg1.25
r_mcbond_other0.656
r_chiral_restr0.174
r_bond_refined_d0.022
r_gen_planes_refined0.01
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms808
Nucleic Acid Atoms
Solvent Atoms107
Heterogen Atoms4

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection
MAR345data collection