X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5proteins 20 mg/mL (in buffer 13 mM Tris and 38 mM NaCl) mixed 1:1 with 0.2 M Ammonium acetate, HEPES 100 mM, PEG 3350 25%, DTT 5 mM, pH 7.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.3246.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.411α = 90
b = 94.897β = 90
c = 150.585γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 315r2011-02-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.98ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5380.2896.20.07813.183.83594435944

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.5380.283410734107183896.140.211930.211930.208360.27924RANDOM43.584
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.63.26-0.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.734
r_dihedral_angle_3_deg18.676
r_dihedral_angle_4_deg15.531
r_dihedral_angle_1_deg6.466
r_scangle_it3.566
r_scbond_it2.135
r_angle_refined_deg1.604
r_mcangle_it1.223
r_mcbond_it0.643
r_chiral_restr0.103
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.734
r_dihedral_angle_3_deg18.676
r_dihedral_angle_4_deg15.531
r_dihedral_angle_1_deg6.466
r_scangle_it3.566
r_scbond_it2.135
r_angle_refined_deg1.604
r_mcangle_it1.223
r_mcbond_it0.643
r_chiral_restr0.103
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7455
Nucleic Acid Atoms
Solvent Atoms163
Heterogen Atoms73

Software

Software
Software NamePurpose
REFMACrefinement