4AJU

Crystal structure of the reactive loop cleaved ZPI in P41 space group


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14.510% 2-PROPANOL, 0.2M LI2SO4, 0.1M NAAC, PH4.5
Crystal Properties
Matthews coefficientSolvent content
2.0745

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.698α = 90
b = 100.698β = 90
c = 78.972γ = 90
Symmetry
Space GroupP 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I03DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.65100.2695.80.079.93220722
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.652.7982.20.721.52.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 7API2.65100.520932112795.540.217540.215420.25766RANDOM77.299
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.061.06-2.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.463
r_dihedral_angle_4_deg17.252
r_dihedral_angle_3_deg15.1
r_dihedral_angle_1_deg5.816
r_scangle_it1.603
r_angle_refined_deg1.021
r_scbond_it0.908
r_angle_other_deg0.743
r_mcangle_it0.736
r_mcbond_it0.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.463
r_dihedral_angle_4_deg17.252
r_dihedral_angle_3_deg15.1
r_dihedral_angle_1_deg5.816
r_scangle_it1.603
r_angle_refined_deg1.021
r_scbond_it0.908
r_angle_other_deg0.743
r_mcangle_it0.736
r_mcbond_it0.38
r_chiral_restr0.061
r_mcbond_other0.039
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3114
Nucleic Acid Atoms
Solvent Atoms10
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALEPACKdata scaling
PHASERphasing