4AHX

Flo5A showing a trinuclear gadolinium cluster on its surface


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.850 MM BISTRIS PROPANE, PH 7.8, 500 MM NACL, 20% PEG 4000
Crystal Properties
Matthews coefficientSolvent content
2.6152.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.23α = 90
b = 62.15β = 90
c = 105.8γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plateOSMIC MIRRORS2010-03-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR591

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5519.2999.50.0516.93.9449032
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.6398.10.382.93.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2XJP1.618.554009573099.540.153580.153030.18327RANDOM15.78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.221.04-0.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.511
r_sphericity_bonded25.54
r_dihedral_angle_4_deg23.172
r_dihedral_angle_3_deg13.055
r_dihedral_angle_1_deg7.204
r_long_range_B_refined6.132
r_long_range_B_other5.384
r_scbond_it4.293
r_scbond_other4.291
r_scangle_other2.499
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.511
r_sphericity_bonded25.54
r_dihedral_angle_4_deg23.172
r_dihedral_angle_3_deg13.055
r_dihedral_angle_1_deg7.204
r_long_range_B_refined6.132
r_long_range_B_other5.384
r_scbond_it4.293
r_scbond_other4.291
r_scangle_other2.499
r_mcangle_it2.13
r_mcangle_other2.129
r_angle_refined_deg1.463
r_mcbond_it1.315
r_mcbond_other1.314
r_angle_other_deg0.751
r_chiral_restr0.09
r_gen_planes_refined0.011
r_bond_refined_d0.008
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1939
Nucleic Acid Atoms
Solvent Atoms401
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing