3WDB

N-terminal domain of Mycobacterium tuberculosis ClpC1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.52910.2M ammonium acetate, 20% polyethylene glycol 3350, 0.025M magnesium formate, pH 7.5, VAPOR DIFFUSION, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.448.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.37α = 90
b = 57.15β = 90
c = 65.02γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298PIXELPSI PILATUS 6M2011-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.0SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.375033696

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2Y1Q1.373031935170999.30.14550.14340.1821RANDOM22.21
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.31-0.570.26
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free40.16
r_dihedral_angle_2_deg39.74
r_sphericity_bonded18.796
r_dihedral_angle_4_deg15.831
r_dihedral_angle_3_deg13.324
r_dihedral_angle_1_deg4.9
r_rigid_bond_restr3.451
r_angle_refined_deg1.556
r_chiral_restr0.089
r_bond_refined_d0.013
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free40.16
r_dihedral_angle_2_deg39.74
r_sphericity_bonded18.796
r_dihedral_angle_4_deg15.831
r_dihedral_angle_3_deg13.324
r_dihedral_angle_1_deg4.9
r_rigid_bond_restr3.451
r_angle_refined_deg1.556
r_chiral_restr0.089
r_bond_refined_d0.013
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1144
Nucleic Acid Atoms
Solvent Atoms170
Heterogen Atoms3

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling