3TJW

Crystal Structure of Quasiracemic Villin Headpiece Subdomain Containing (F5Phe10) Substitution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.752982.0 M ammonium sulfate, 6% isopropanol, 8% glycerol, pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.3748.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.656α = 90
b = 88.112β = 90
c = 88.663γ = 90
Symmetry
Space GroupF 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2010-10-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-F0.97872APS21-ID-F

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4632.8898.70.03434.614.4131911319111
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.461.4986.20.0813569

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.4632.88131911319064698.70.15210.15010.1895RANDOM15.3321
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.350.160.19
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free38.429
r_dihedral_angle_2_deg29.313
r_dihedral_angle_4_deg15.399
r_dihedral_angle_3_deg12.97
r_sphericity_bonded8.184
r_dihedral_angle_1_deg4.386
r_rigid_bond_restr1.9
r_angle_refined_deg1.733
r_angle_other_deg0.826
r_chiral_restr0.077
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free38.429
r_dihedral_angle_2_deg29.313
r_dihedral_angle_4_deg15.399
r_dihedral_angle_3_deg12.97
r_sphericity_bonded8.184
r_dihedral_angle_1_deg4.386
r_rigid_bond_restr1.9
r_angle_refined_deg1.733
r_angle_other_deg0.826
r_chiral_restr0.077
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.004
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms559
Nucleic Acid Atoms
Solvent Atoms65
Heterogen Atoms15

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MD2data collection