3QAH

Crystal structure of apo-form human MOF catalytic domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52930.1M Bis-Tris, 0.2M MgCl2, 25% PEG 3350, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4349.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.913α = 90
b = 60.69β = 90
c = 124.368γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2010-02-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U1.0000SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15095.70.0966.320135

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2GIV2.143.0720086102295.70.1950.19320.2283RANDOM27.1207
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.482.24-1.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.657
r_dihedral_angle_3_deg15.31
r_dihedral_angle_4_deg11.123
r_scangle_it5.71
r_dihedral_angle_1_deg5.246
r_scbond_it3.543
r_mcangle_it2.993
r_rigid_bond_restr2.642
r_sphericity_free2.29
r_mcbond_it1.795
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.657
r_dihedral_angle_3_deg15.31
r_dihedral_angle_4_deg11.123
r_scangle_it5.71
r_dihedral_angle_1_deg5.246
r_scbond_it3.543
r_mcangle_it2.993
r_rigid_bond_restr2.642
r_sphericity_free2.29
r_mcbond_it1.795
r_angle_refined_deg0.99
r_sphericity_bonded0.948
r_chiral_restr0.072
r_bond_refined_d0.009
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2266
Nucleic Acid Atoms
Solvent Atoms194
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing