3PX8

RTA in complex with 7-carboxy-pterin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1hanging drop8.92774.1% PEG 8000, 75 mM Bicine pH 8.9, 10 mM 2-mercaptoethanol, 1 mM EDTA, hanging drop, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.2745.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.662α = 90
b = 67.567β = 112.78
c = 49.41γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152010-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.30.9765ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.295095.40.04212.83.761978
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.291.3191.20.2763.62952

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.2945.5661936312995.310.20760.20630.2332RANDOM15.982
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.25-0.3-0.510.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.917
r_dihedral_angle_4_deg21.319
r_dihedral_angle_3_deg11.327
r_dihedral_angle_1_deg5.389
r_scangle_it4.374
r_scbond_it3.026
r_angle_refined_deg2.283
r_mcangle_it2.143
r_mcbond_it1.303
r_chiral_restr0.146
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.917
r_dihedral_angle_4_deg21.319
r_dihedral_angle_3_deg11.327
r_dihedral_angle_1_deg5.389
r_scangle_it4.374
r_scbond_it3.026
r_angle_refined_deg2.283
r_mcangle_it2.143
r_mcbond_it1.303
r_chiral_restr0.146
r_bond_refined_d0.029
r_gen_planes_refined0.017
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2041
Nucleic Acid Atoms
Solvent Atoms116
Heterogen Atoms15

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
HKL-2000data reduction
HKL-2000data scaling