3OWA

Crystal Structure of Acyl-CoA Dehydrogenase complexed with FAD from Bacillus anthracis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52890.05 M Ammonium sulfate 0.05 M BIS-TRIS pH6.5, 30 % v/v Pentaerythritol ethoxylate (15/4 EO/OH), VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.7455.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.613α = 92.8
b = 98.028β = 106.63
c = 107.743γ = 105.3
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rmirrors2010-03-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97926APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.975097.30.05412.12.5195135195135
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.97292.60.442.032.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDBID 2Z1Q1.9750185170185170984296.920.164170.16220.20131RANDOM46.751
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.081.162.10.063.622.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.668
r_dihedral_angle_4_deg18.203
r_dihedral_angle_3_deg15.647
r_scangle_it5.649
r_dihedral_angle_1_deg5.167
r_scbond_it3.993
r_mcangle_it1.833
r_angle_refined_deg1.425
r_mcbond_it0.979
r_chiral_restr0.104
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.668
r_dihedral_angle_4_deg18.203
r_dihedral_angle_3_deg15.647
r_scangle_it5.649
r_dihedral_angle_1_deg5.167
r_scbond_it3.993
r_mcangle_it1.833
r_angle_refined_deg1.425
r_mcbond_it0.979
r_chiral_restr0.104
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18051
Nucleic Acid Atoms
Solvent Atoms2147
Heterogen Atoms362

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data collection
BALBESphasing
PHENIXrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling