3OOW

Octameric structure of the phosphoribosylaminoimidazole carboxylase catalytic subunit from Francisella tularensis subsp. tularensis SCHU S4.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52950.2 M NH4 Dihydrogen PO4, 0.1 M Tris, 6% MPD, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
1.9236.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.56α = 90
b = 96.3β = 90
c = 128.62γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCDMIRROR2010-08-13MMOLECULAR REPLACEMENT
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D0.75145APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7530990.0812.547.4110138110138-331.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.751.7898.80.463.387.75387

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTPDB entry 3OPQ1.7577.09104329104329549329.380.170160.168330.2051RANDOM20.705
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.992.69-1.7
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.63
r_dihedral_angle_4_deg22.651
r_dihedral_angle_3_deg11.603
r_dihedral_angle_1_deg5.154
r_scangle_it4.625
r_scbond_it3.158
r_mcangle_it1.726
r_angle_refined_deg1.5
r_angle_other_deg0.962
r_mcbond_it0.954
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.63
r_dihedral_angle_4_deg22.651
r_dihedral_angle_3_deg11.603
r_dihedral_angle_1_deg5.154
r_scangle_it4.625
r_scbond_it3.158
r_mcangle_it1.726
r_angle_refined_deg1.5
r_angle_other_deg0.962
r_mcbond_it0.954
r_mcbond_other0.276
r_chiral_restr0.09
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9454
Nucleic Acid Atoms
Solvent Atoms545
Heterogen Atoms170

Software

Software
Software NamePurpose
Blu-Icedata collection
CCP4model building
MrBUMPphasing
PHENIXmodel building
REFMACrefinement
XSCALEdata scaling
CCP4phasing
PHENIXphasing