3L2A

Crystal structure of Reston Ebola VP35 interferon inhibitory domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP329316% PEG3350, 0.1M SODIUM ACETATE, 14% TACSIMATE, pH 3.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.3647.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.551α = 90
b = 51.551β = 90
c = 50.865γ = 90
Symmetry
Space GroupP 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2009-11-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.979APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.715099.80.7397.413734-5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.711.741000.6032.97.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3FKE1.7122.991373472999.850.172570.172570.170.22528RANDOM20.753
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01-0.010.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.879
r_dihedral_angle_4_deg17.986
r_dihedral_angle_3_deg14.042
r_dihedral_angle_1_deg5.424
r_scangle_it3.378
r_scbond_it2.149
r_mcangle_it1.416
r_angle_refined_deg1.313
r_mcbond_it0.861
r_nbtor_refined0.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.879
r_dihedral_angle_4_deg17.986
r_dihedral_angle_3_deg14.042
r_dihedral_angle_1_deg5.424
r_scangle_it3.378
r_scbond_it2.149
r_mcangle_it1.416
r_angle_refined_deg1.313
r_mcbond_it0.861
r_nbtor_refined0.312
r_nbd_refined0.202
r_symmetry_vdw_refined0.196
r_xyhbond_nbd_refined0.155
r_symmetry_hbond_refined0.094
r_chiral_restr0.09
r_bond_refined_d0.014
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms984
Nucleic Acid Atoms
Solvent Atoms93
Heterogen Atoms14

Software

Software
Software NamePurpose
HKL-3000data collection
PHASERphasing
REFMACrefinement
HKL-3000data reduction
SCALEPACKdata scaling