3J24
CryoEM reconstruction of complement decay-accelerating factor
ELECTRON MICROSCOPY
Sample |
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Complement decay-accelerating factor bound to coxsackievirus B3-RD strain |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | HOMEMADE PLUNGER |
Cryogen Name | ETHANE |
Sample Vitrification Details | Blotted before plunging in liquid ethane (homemade plunger). |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 3010 |
Reported Resolution (Å) | 9 |
Resolution Method | |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | I |
Map-Model Fitting and Refinement | |||||
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Id | 1 (1OJW) | ||||
Refinement Space | REAL | ||||
Refinement Protocol | RIGID BODY FIT | ||||
Refinement Target | average map value | ||||
Overall B Value | |||||
Fitting Procedure | |||||
Details | METHOD--Local refinement, rigid body REFINEMENT PROTOCOL--rigid body |
Data Acquisition | |||||||||
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Detector Type | KODAK SO-163 FILM | ||||||||
Electron Dose (electrons/Å**2) | 24 |
Imaging Experiment | 1 |
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Date of Experiment | 2006-08-04 |
Temperature (Kelvin) | 93 |
Microscope Model | FEI/PHILIPS CM300FEG/T |
Minimum Defocus (nm) | 1000 |
Maximum Defocus (nm) | 4600 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | GATAN LIQUID NITROGEN |
Nominal Magnification | 45000 |
Calibrated Magnification | 47000 |
Source | TUNGSTEN HAIRPIN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
CTF CORRECTION | CTFFIND | |
MODEL FITTING | UCSF Chimera | |
PARTICLE SELECTION | autopp | |
PARTICLE SELECTION | RobEM | |
RECONSTRUCTION | Auto3DEM |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
AUTO3DEM |