3I4F

Structure of putative 3-oxoacyl-reductase from bacillus thuringiensis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.52980.1M Acetate pH 4.5, 30% PEG400, 0.2M Calcium Acetate monohydrate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
1.9837.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.418α = 90
b = 86.592β = 97.05
c = 78.413γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152009-04-02SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A0.979NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45099.50.0878.34.33616236162
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4997.50.4494.23532

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.3927.636140184199.30.1950.1920.248RANDOM38.086
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.62-1.54-0.423.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.77
r_dihedral_angle_4_deg17.424
r_dihedral_angle_3_deg17.367
r_dihedral_angle_1_deg5.353
r_scangle_it2.422
r_scbond_it1.389
r_angle_refined_deg1.177
r_mcangle_it0.911
r_mcbond_it0.469
r_chiral_restr0.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.77
r_dihedral_angle_4_deg17.424
r_dihedral_angle_3_deg17.367
r_dihedral_angle_1_deg5.353
r_scangle_it2.422
r_scbond_it1.389
r_angle_refined_deg1.177
r_mcangle_it0.911
r_mcbond_it0.469
r_chiral_restr0.08
r_bond_refined_d0.01
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7467
Nucleic Acid Atoms
Solvent Atoms60
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CBASSdata collection
HKL-2000data reduction
PHENIXphasing