3HB4

17beta-hydroxysteroid dehydrogenase type1 complexed with E2B


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5300pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties
Matthews coefficientSolvent content
2.2946.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 123.08α = 90
b = 43.7β = 100.74
c = 60.51γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray277 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2118.9815658
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.212.26397.80.04514876

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.2118.98148767821000.194090.190790.25739RANDOM28.917
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.01-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.716
r_dihedral_angle_3_deg18.968
r_dihedral_angle_4_deg16.368
r_dihedral_angle_1_deg7.39
r_scangle_it4.972
r_scbond_it3.26
r_angle_refined_deg2.235
r_mcangle_it2.158
r_mcbond_it1.329
r_nbtor_refined0.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.716
r_dihedral_angle_3_deg18.968
r_dihedral_angle_4_deg16.368
r_dihedral_angle_1_deg7.39
r_scangle_it4.972
r_scbond_it3.26
r_angle_refined_deg2.235
r_mcangle_it2.158
r_mcbond_it1.329
r_nbtor_refined0.308
r_symmetry_vdw_refined0.25
r_nbd_refined0.231
r_symmetry_hbond_refined0.217
r_xyhbond_nbd_refined0.161
r_chiral_restr0.146
r_bond_refined_d0.024
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2188
Nucleic Acid Atoms
Solvent Atoms45
Heterogen Atoms30

Software

Software
Software NamePurpose
CrystalCleardata collection
REFMACrefinement
XDSdata reduction