X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
12910.2 Mg Acetate, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.0238.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.077α = 90
b = 111.732β = 90
c = 135.173γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315MIRRORS2008-03-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-IDAPS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.454093.90.083214.438331260.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.452.4995.20.43.84.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.45403818036261191993.40.2140.210.277RANDOM20.38
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.023.39-2.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.716
r_dihedral_angle_4_deg20.233
r_dihedral_angle_3_deg17.746
r_dihedral_angle_1_deg6.423
r_scangle_it2.039
r_scbond_it1.281
r_angle_refined_deg1.166
r_angle_other_deg0.858
r_mcangle_it0.785
r_mcbond_it0.404
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.716
r_dihedral_angle_4_deg20.233
r_dihedral_angle_3_deg17.746
r_dihedral_angle_1_deg6.423
r_scangle_it2.039
r_scbond_it1.281
r_angle_refined_deg1.166
r_angle_other_deg0.858
r_mcangle_it0.785
r_mcbond_it0.404
r_mcbond_other0.073
r_chiral_restr0.071
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8349
Nucleic Acid Atoms
Solvent Atoms81
Heterogen Atoms4

Software

Software
Software NamePurpose
SBC-Collectdata collection
HKL-3000phasing
SHELXDphasing
MLPHAREphasing
Cootmodel building
PHENIXmodel building
CCP4model building
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing
CCP4phasing