X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1SMALL TUBES6.8292pH 6.8, SMALL TUBES, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.4750.16

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 128.639α = 90
b = 128.639β = 90
c = 116.353γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2002-11-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.60.87000SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.130990.05914.25.65690431.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.12.141000.4785.15.62851

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2PRJ2.13053971288699.240.198570.197060.22734RANDOM36.689
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.930.93-1.85
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.58
r_dihedral_angle_4_deg18.836
r_dihedral_angle_3_deg15.779
r_dihedral_angle_1_deg5.25
r_scangle_it2.178
r_scbond_it1.314
r_mcangle_it1.077
r_angle_refined_deg1.044
r_mcbond_it0.617
r_nbtor_refined0.303
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.58
r_dihedral_angle_4_deg18.836
r_dihedral_angle_3_deg15.779
r_dihedral_angle_1_deg5.25
r_scangle_it2.178
r_scbond_it1.314
r_mcangle_it1.077
r_angle_refined_deg1.044
r_mcbond_it0.617
r_nbtor_refined0.303
r_nbd_refined0.183
r_symmetry_vdw_refined0.174
r_symmetry_hbond_refined0.116
r_xyhbond_nbd_refined0.109
r_chiral_restr0.076
r_bond_refined_d0.008
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6653
Nucleic Acid Atoms
Solvent Atoms228
Heterogen Atoms20

Software

Software
Software NamePurpose
HKL-2000data collection
AMoREphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling