3E7Q

The crystal structure of the putative transcriptional regulator from Pseudomonas aeruginosa PAO1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529820% PEG3350, 0.2M MgNitrate, NDSB 256, 0.3M, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.6353.15

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 160.613α = 90
b = 53.706β = 90
c = 57.08γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315mirrors2007-06-11MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.9794, 0.9796APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.280.320.960.7358.424450234722240.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.260.7670.6181.23.31880

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.280.3224450234721259960.216740.213890.26551RANDOM39.457
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.030.650.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.887
r_dihedral_angle_4_deg21.808
r_dihedral_angle_3_deg17.707
r_dihedral_angle_1_deg7.072
r_scangle_it3.822
r_scbond_it2.617
r_angle_refined_deg1.771
r_mcangle_it1.745
r_mcbond_it1.216
r_angle_other_deg1.132
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.887
r_dihedral_angle_4_deg21.808
r_dihedral_angle_3_deg17.707
r_dihedral_angle_1_deg7.072
r_scangle_it3.822
r_scbond_it2.617
r_angle_refined_deg1.771
r_mcangle_it1.745
r_mcbond_it1.216
r_angle_other_deg1.132
r_symmetry_hbond_refined0.339
r_symmetry_vdw_other0.309
r_symmetry_vdw_refined0.303
r_mcbond_other0.231
r_nbd_refined0.23
r_xyhbond_nbd_refined0.227
r_nbd_other0.203
r_nbtor_refined0.18
r_chiral_restr0.1
r_nbtor_other0.095
r_bond_refined_d0.021
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3206
Nucleic Acid Atoms
Solvent Atoms133
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing