X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52950.1 M Hepes, 1.5 M ammonium sulfate, 4% PEG 4000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.8356.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 230.606α = 90
b = 145.512β = 93.78
c = 53.234γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV2003-04-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.301251000.06518.83.5377406
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.3012.3899.90.3433.63.47649

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2A8D2.30124.78774047740478081000.2050.2050.2010.244RANDOM44.228
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.12-0.030.02-0.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.527
r_dihedral_angle_4_deg19.481
r_dihedral_angle_3_deg16.031
r_dihedral_angle_1_deg5.921
r_scangle_it2.047
r_scbond_it1.481
r_angle_refined_deg1.233
r_mcangle_it0.921
r_angle_other_deg0.886
r_mcbond_it0.751
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.527
r_dihedral_angle_4_deg19.481
r_dihedral_angle_3_deg16.031
r_dihedral_angle_1_deg5.921
r_scangle_it2.047
r_scbond_it1.481
r_angle_refined_deg1.233
r_mcangle_it0.921
r_angle_other_deg0.886
r_mcbond_it0.751
r_symmetry_hbond_refined0.341
r_nbd_refined0.22
r_nbd_other0.189
r_symmetry_vdw_refined0.177
r_nbtor_refined0.174
r_xyhbond_nbd_refined0.165
r_symmetry_vdw_other0.164
r_mcbond_other0.11
r_nbtor_other0.088
r_chiral_restr0.073
r_xyhbond_nbd_other0.063
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9906
Nucleic Acid Atoms
Solvent Atoms158
Heterogen Atoms70

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
EPMRphasing
REFMACrefinement
PDB_EXTRACTdata extraction