3DVM

Crystal Structure of Ca2+/CaM-CaV2.1 IQ domain complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.52920.1 M Bis-Tris, 25 % PEG 3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.3848.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.956α = 90
b = 43.956β = 90
c = 337.87γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152008-02-22MSINGLE WAVELENGTH
21x-ray100CCDADSC QUANTUM 3152008-02-22MMAD
31x-ray100CCDADSC QUANTUM 3152008-02-22MMAD
41x-ray100CCDADSC QUANTUM 3152008-02-22MMAD
1,2,3,41
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.11587ALS8.3.1
2SYNCHROTRONALS BEAMLINE 8.3.10.97957ALS8.3.1
3SYNCHROTRONALS BEAMLINE 8.3.10.97969ALS8.3.1
4SYNCHROTRONALS BEAMLINE 8.3.11.01987ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,2,3,42.62094.70.05516.46481
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,2,3,42.62.6972.30.2729.8456

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.620646031095.70.2780.2760.32RANDOM58.034
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.281.142.28-3.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.479
r_dihedral_angle_4_deg22.112
r_dihedral_angle_3_deg17.079
r_dihedral_angle_1_deg6.658
r_scangle_it4.312
r_mcangle_it3.885
r_scbond_it3.028
r_mcbond_it2.422
r_angle_refined_deg1.353
r_chiral_restr0.081
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.479
r_dihedral_angle_4_deg22.112
r_dihedral_angle_3_deg17.079
r_dihedral_angle_1_deg6.658
r_scangle_it4.312
r_mcangle_it3.885
r_scbond_it3.028
r_mcbond_it2.422
r_angle_refined_deg1.353
r_chiral_restr0.081
r_bond_refined_d0.015
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1174
Nucleic Acid Atoms
Solvent Atoms10
Heterogen Atoms4

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling