HK97 bacteriophage capsid Expansion Intermediate-II model
ELECTRON MICROSCOPY
Sample
Bacteriophage HK97 Expansion Intermediate II
Specimen Preparation
Sample Aggregation State
PARTICLE
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
Reported Resolution (Å)
Resolution Method
Other Details
Refinement Type
Symmetry Type
POINT
Point Symmetry
I
Map-Model Fitting and Refinement
Id
1 (1OHG)
Refinement Space
RECIPROCAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Vector Reciprocal Space Target
Overall B Value
Fitting Procedure
Details
METHOD--manual and rigid body fitting. THE COORDINATES CONTAIN ONLY THE
BACKBONE ATOMS. DURING RIGID BODY DOCKING OF THE PROTEIN MODEL INTO THE EM
D ...
METHOD--manual and rigid body fitting. THE COORDINATES CONTAIN ONLY THE
BACKBONE ATOMS. DURING RIGID BODY DOCKING OF THE PROTEIN MODEL INTO THE EM
DENSITY, THE TWO SUBDOMAINS 104-125 AND 155-175 OF EACH SUBUNIT WERE ALLOWED TO
MOVE INDEPENDENTLY FROM THE REMAINDER OF THE RESIDUES (THE CORE OF EACH
SUBUNIT). THAT IS WHY THE CONNECTIVITY OF THOSE SEGMENTS WITH THE REST OF THE
SUBUNIT IS NOT WELL-PRESERVED. REFINEMENT PROTOCOL--Rigid Body, Magnification
Optimized using Van Der Waals Constraints and Real-space Correlation Coefficient
