2Y9N

Cellobiohydrolase I Cel7A from Trichoderma harzianum at 2.9 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
135% PEG 4000.
Crystal Properties
Matthews coefficientSolvent content
1.7731

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.941α = 90
b = 69.259β = 90
c = 90.735γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE W01B-MX2LNLSW01B-MX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.955.199.60.126.5784932

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1CEL2.8955.05846439299.340.224020.222140.26186RANDOM20.999
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.83-0.682.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.567
r_dihedral_angle_4_deg14.638
r_dihedral_angle_3_deg12.48
r_dihedral_angle_1_deg9.468
r_mcangle_it7.291
r_mcbond_it5.282
r_scangle_it2.665
r_scbond_it1.762
r_angle_refined_deg1.035
r_chiral_restr0.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.567
r_dihedral_angle_4_deg14.638
r_dihedral_angle_3_deg12.48
r_dihedral_angle_1_deg9.468
r_mcangle_it7.291
r_mcbond_it5.282
r_scangle_it2.665
r_scbond_it1.762
r_angle_refined_deg1.035
r_chiral_restr0.05
r_gen_planes_refined0.01
r_bond_refined_d0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3169
Nucleic Acid Atoms
Solvent Atoms77
Heterogen Atoms52

Software

Software
Software NamePurpose
REFMACrefinement