2WG5

Proteasome-Activating Nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1100 MM TRIS PH 9.0, 1 M NH4H2PO4, 25% ETHYLENE GLYCOL
Crystal Properties
Matthews coefficientSolvent content
2.8657

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.39α = 90
b = 91.95β = 119.93
c = 103.22γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.134.3699.60.0416.954.2897626
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.2299.70.692.264.23

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2WFW2.134.3692772485399.860.199010.197530.22742RANDOM41.365
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.36-0.170.74-0.55
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.047
r_dihedral_angle_4_deg22.065
r_dihedral_angle_3_deg15.745
r_scangle_it11.533
r_scbond_it8.322
r_dihedral_angle_1_deg6.563
r_mcangle_it6.375
r_mcbond_it4.308
r_angle_other_deg4.229
r_angle_refined_deg1.628
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.047
r_dihedral_angle_4_deg22.065
r_dihedral_angle_3_deg15.745
r_scangle_it11.533
r_scbond_it8.322
r_dihedral_angle_1_deg6.563
r_mcangle_it6.375
r_mcbond_it4.308
r_angle_other_deg4.229
r_angle_refined_deg1.628
r_nbd_other0.233
r_symmetry_vdw_other0.21
r_nbd_refined0.205
r_xyhbond_nbd_refined0.177
r_nbtor_refined0.173
r_symmetry_vdw_refined0.141
r_symmetry_hbond_refined0.132
r_nbtor_other0.112
r_chiral_restr0.1
r_xyhbond_nbd_other0.028
r_bond_refined_d0.018
r_gen_planes_refined0.006
r_gen_planes_other0.006
r_bond_other_d
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8029
Nucleic Acid Atoms
Solvent Atoms428
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing