2WFJ

Atomic resolution crystal structure of the PPIase domain of human cyclophilin G in complex with cyclosporin A.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.528-32% (W/V) PEG 4000, 0.2M MGCL2, 0.1M TRIS PH 8.5
Crystal Properties
Matthews coefficientSolvent content
1.8734.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.319α = 90
b = 64.913β = 90
c = 69.285γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHCOLLIMATORMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.754099.10.0611.65.252129722
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.750.7890.40.333.633.43

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONDIRECT METHODSFREE R-VALUENONE0.75102127421064499.10.1120.1110.129RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
201253.371660.65
RMS Deviations
KeyRefinement Restraint Deviation
s_approx_iso_adps0.115
s_non_zero_chiral_vol0.108
s_zero_chiral_vol0.094
s_anti_bump_dis_restr0.052
s_similar_adp_cmpnt0.043
s_angle_d0.035
s_from_restr_planes0.032
s_bond_d0.016
s_rigid_bond_adp_cmpnt0.005
s_similar_dist
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1428
Nucleic Acid Atoms
Solvent Atoms298
Heterogen Atoms6

Software

Software
Software NamePurpose
SHELXL-97refinement
XDSdata reduction
XDSdata scaling
SHELXphasing