2UX0

Structure of the oligomerisation domain of calcium-calmodulin dependent protein kinase II gamma


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
170.1 M SPG PH 7.0, 60% MPD
Crystal Properties
Matthews coefficientSolvent content
2.6453

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 122.954α = 90
b = 158.363β = 90
c = 103.941γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2006-12-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4639.778.20.0611.42.6329117
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.462.5610.20.461.450.13

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HKX2.4639.6827628146778.40.1860.1840.224RANDOM34.13
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.06-0.541.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.556
r_dihedral_angle_4_deg22.557
r_dihedral_angle_3_deg16.891
r_scangle_it9.668
r_scbond_it6.985
r_dihedral_angle_1_deg6.101
r_mcangle_it4.416
r_mcbond_it2.82
r_angle_refined_deg1.25
r_angle_other_deg0.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.556
r_dihedral_angle_4_deg22.557
r_dihedral_angle_3_deg16.891
r_scangle_it9.668
r_scbond_it6.985
r_dihedral_angle_1_deg6.101
r_mcangle_it4.416
r_mcbond_it2.82
r_angle_refined_deg1.25
r_angle_other_deg0.91
r_nbd_refined0.209
r_nbd_other0.188
r_nbtor_refined0.177
r_symmetry_vdw_other0.173
r_xyhbond_nbd_refined0.159
r_symmetry_vdw_refined0.148
r_symmetry_hbond_refined0.124
r_nbtor_other0.085
r_chiral_restr0.071
r_bond_refined_d0.012
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6360
Nucleic Acid Atoms
Solvent Atoms99
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing