2UUX

Structure of the tryptase inhibitor TdPI from a tick


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
12.4 M AMMONIUM SULFATE 0.1 M TRIS-HCL, PH 8 20% MPD
Crystal Properties
Matthews coefficientSolvent content
1.5835.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.676α = 90
b = 28.594β = 90
c = 30.11γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM14ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.420910.03218.8109421.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.5720.621.64

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.419.57845445196.80.1710.1680.224RANDOM13.35
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.47-0.050.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.288
r_dihedral_angle_3_deg12.756
r_dihedral_angle_4_deg10.337
r_dihedral_angle_1_deg6.58
r_scangle_it3.898
r_scbond_it3.568
r_mcangle_it2.611
r_mcbond_it2.124
r_angle_refined_deg1.671
r_angle_other_deg0.947
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.288
r_dihedral_angle_3_deg12.756
r_dihedral_angle_4_deg10.337
r_dihedral_angle_1_deg6.58
r_scangle_it3.898
r_scbond_it3.568
r_mcangle_it2.611
r_mcbond_it2.124
r_angle_refined_deg1.671
r_angle_other_deg0.947
r_symmetry_vdw_refined0.273
r_symmetry_vdw_other0.263
r_nbd_refined0.232
r_nbtor_refined0.199
r_nbd_other0.197
r_symmetry_hbond_refined0.159
r_xyhbond_nbd_refined0.158
r_chiral_restr0.096
r_nbtor_other0.082
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms415
Nucleic Acid Atoms
Solvent Atoms78
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SHELXphasing