2RUP
Solution structure of rat P2X4 receptor head domain
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
2 | 2D 1H-13C HSQC aliphatic | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
3 | 2D 1H-13C HSQC aromatic | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
4 | 3D CBCA(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
5 | 3D C(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
6 | 3D HNCO | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
7 | 3D HNCA | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
8 | 3D HNCACB | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
9 | 3D HN(CO)CA | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
10 | 3D H(CCO)NH | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
11 | 3D 1H-15N NOESY | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
12 | 3D 1H-15N TOCSY | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
13 | 3D HCCH-TOCSY | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
14 | 3D HCCH-COSY | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 | |
15 | 3D 1H-13C NOESY | 0.5 mM [U-99% 13C; U-99% 15N] entity-1, 50 mM Urea-2, 10 mM sodium acetate-3 | 90% H2O/10% D2O | 0 | 5.0 | ambient | 297 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.1 | G ntert P. |
2 | data analysis | CYANA | 2.1 | G ntert P. |
3 | chemical shift assignment | CYANA | 2.1 | G ntert P. |
4 | structure solution | CYANA | 2.1 | Cornilescu, Delaglio and Bax |
5 | data analysis | CYANA | 2.1 | Cornilescu, Delaglio and Bax |
6 | chemical shift assignment | CYANA | 2.1 | Cornilescu, Delaglio and Bax |
7 | structure solution | CYANA | 2.1 | Hokkaido University |
8 | data analysis | CYANA | 2.1 | Hokkaido University |
9 | chemical shift assignment | CYANA | 2.1 | Hokkaido University |
10 | structure solution | CYANA | 2.1 | G ntert P. |
11 | data analysis | CYANA | 2.1 | G ntert P. |
12 | chemical shift assignment | CYANA | 2.1 | G ntert P. |
13 | structure solution | CYANA | 2.1 | Cornilescu, Delaglio and Bax |
14 | data analysis | CYANA | 2.1 | Cornilescu, Delaglio and Bax |
15 | chemical shift assignment | CYANA | 2.1 | Cornilescu, Delaglio and Bax |
16 | structure solution | CYANA | 2.1 | Hokkaido University |
17 | data analysis | CYANA | 2.1 | Hokkaido University |
18 | chemical shift assignment | CYANA | 2.1 | Hokkaido University |
19 | structure solution | CYANA | 2.1 | G ntert P. |
20 | data analysis | CYANA | 2.1 | G ntert P. |
21 | chemical shift assignment | CYANA | 2.1 | G ntert P. |
22 | structure solution | CYANA | 2.1 | Cornilescu, Delaglio and Bax |
23 | data analysis | CYANA | 2.1 | Cornilescu, Delaglio and Bax |
24 | chemical shift assignment | CYANA | 2.1 | Cornilescu, Delaglio and Bax |
25 | structure solution | CYANA | 2.1 | Hokkaido University |
26 | data analysis | CYANA | 2.1 | Hokkaido University |
27 | chemical shift assignment | CYANA | 2.1 | Hokkaido University |
28 | refinement | CYANA |