2QW1

Glucose/galactose binding protein bound to 3-O-methyl D-glucose


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP62982.0 M ammonium sulfate and 0.05 M sodium citrate dehydrate, 3-O-methyl glucose (5mM) was soaked in. 2.5 M Na Malonate cryoprotectant, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.564.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.93α = 90
b = 74.66β = 90
c = 110.07γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDBruker Platinum 1352005-07-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75090.10.034125.156.315242847220
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7556.80.25893.822.111972

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2FW01.7404973343596229187.660.181590.181590.180380.20426RANDOM13.533
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.430.65-0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.088
r_dihedral_angle_3_deg12.981
r_dihedral_angle_4_deg9.285
r_dihedral_angle_1_deg5.331
r_scangle_it3.664
r_scbond_it2.21
r_angle_refined_deg1.295
r_mcangle_it1.266
r_mcbond_it0.678
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.088
r_dihedral_angle_3_deg12.981
r_dihedral_angle_4_deg9.285
r_dihedral_angle_1_deg5.331
r_scangle_it3.664
r_scbond_it2.21
r_angle_refined_deg1.295
r_mcangle_it1.266
r_mcbond_it0.678
r_nbtor_refined0.306
r_nbd_refined0.198
r_symmetry_vdw_refined0.155
r_xyhbond_nbd_refined0.127
r_metal_ion_refined0.118
r_symmetry_hbond_refined0.115
r_chiral_restr0.091
r_bond_refined_d0.012
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2319
Nucleic Acid Atoms
Solvent Atoms351
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
PROTEUM PLUSdata collection
SAINTdata reduction
PROTEUM PLUSdata scaling
CNSphasing