X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.2144.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 27.926α = 74.57
b = 53.03β = 81.37
c = 71.963γ = 75.61
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATERIGAKUMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.425.6786.050.05481292611632

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUTsmall helical fragments2.425.6712926129486.050.1910.1840.253RANDOM58.401
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.770.71-0.09-0.34-0.19-0.66
RMS Deviations
KeyRefinement Restraint Deviation
r_angle_refined_deg1.85
r_scangle_it1.715
r_scbond_it1.08
r_nbtor_refined0.282
r_symmetry_hbond_refined0.196
r_xyhbond_nbd_refined0.194
r_nbd_refined0.189
r_symmetry_vdw_refined0.162
r_metal_ion_refined0.117
r_chiral_restr0.105
RMS Deviations
KeyRefinement Restraint Deviation
r_angle_refined_deg1.85
r_scangle_it1.715
r_scbond_it1.08
r_nbtor_refined0.282
r_symmetry_hbond_refined0.196
r_xyhbond_nbd_refined0.194
r_nbd_refined0.189
r_symmetry_vdw_refined0.162
r_metal_ion_refined0.117
r_chiral_restr0.105
r_bond_refined_d0.009
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms2966
Solvent Atoms131
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction