X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.5277NANODROP, 0.2M MgCl2, 30.0% PEG 4000, 0.1M Tris-HCl pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.1743.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.197α = 90
b = 74.438β = 113.39
c = 95.727γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat mirror (vertical focusing)2007-03-10MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-10.97937, 0.91837, 0.97910SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7929.4599.90.1080.1084.83.29372718.53
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.791.841000.6530.6531.13.16901

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.7929.4593699470099.860.2240.2240.2210.27RANDOM17.196
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.35-0.33-1.40.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.609
r_dihedral_angle_4_deg16.333
r_dihedral_angle_3_deg10.28
r_scangle_it6.855
r_scbond_it5.298
r_dihedral_angle_1_deg4.279
r_mcangle_it2.793
r_mcbond_it1.997
r_angle_refined_deg1.71
r_angle_other_deg1.014
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.609
r_dihedral_angle_4_deg16.333
r_dihedral_angle_3_deg10.28
r_scangle_it6.855
r_scbond_it5.298
r_dihedral_angle_1_deg4.279
r_mcangle_it2.793
r_mcbond_it1.997
r_angle_refined_deg1.71
r_angle_other_deg1.014
r_mcbond_other0.789
r_symmetry_hbond_refined0.257
r_symmetry_vdw_other0.241
r_xyhbond_nbd_refined0.229
r_nbd_refined0.212
r_symmetry_vdw_refined0.203
r_nbtor_refined0.18
r_nbd_other0.176
r_metal_ion_refined0.156
r_chiral_restr0.1
r_nbtor_other0.088
r_xyhbond_nbd_other0.031
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8049
Nucleic Acid Atoms
Solvent Atoms1310
Heterogen Atoms51

Software

Software
Software NamePurpose
MolProbitymodel building
SHELXphasing
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
MAR345data collection
MOSFLMdata reduction
CCP4data scaling
SHELXDphasing
autoSHARPphasing