X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP829326% PEG3350, 0.1M Imidazole, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5351.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.046α = 90
b = 56.005β = 97.09
c = 66.204γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2007-02-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B1.0332APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.855099.80.08413.93.622098
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.851.921000.0843.613.42185

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2G8C1.86202092920929112798.970.207640.207640.206080.23635RANDOM39.326
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.531.29-1.3-0.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.193
r_dihedral_angle_4_deg21.524
r_dihedral_angle_3_deg15.832
r_dihedral_angle_1_deg12.837
r_scangle_it5.798
r_scbond_it4.032
r_mcbond_it2.384
r_mcangle_it2.276
r_angle_refined_deg1.971
r_angle_other_deg0.89
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.193
r_dihedral_angle_4_deg21.524
r_dihedral_angle_3_deg15.832
r_dihedral_angle_1_deg12.837
r_scangle_it5.798
r_scbond_it4.032
r_mcbond_it2.384
r_mcangle_it2.276
r_angle_refined_deg1.971
r_angle_other_deg0.89
r_mcbond_other0.393
r_symmetry_vdw_other0.287
r_symmetry_vdw_refined0.281
r_symmetry_hbond_refined0.242
r_nbd_refined0.22
r_nbd_other0.204
r_nbtor_refined0.165
r_xyhbond_nbd_refined0.157
r_chiral_restr0.126
r_nbtor_other0.087
r_bond_refined_d0.023
r_gen_planes_refined0.009
r_bond_other_d0.006
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1814
Nucleic Acid Atoms
Solvent Atoms88
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data collection
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing