2OV6
The NMR structure of subunit F of the Methanogenic A1Ao ATP synthase and its interaction with the nucleotide-binding subunit B
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 15N-edited-HSQC-NOESY | 0.5mM F subunit uniformly labeled 15N; 15N, 13C; 25mM phosphate buffer pH 6.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
2 | HNCA | 0.5mM F subunit uniformly labeled 15N; 15N, 13C; 25mM phosphate buffer pH 6.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
3 | HNCACB | 0.5mM F subunit uniformly labeled 15N; 15N, 13C; 25mM phosphate buffer pH 6.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
4 | CBCACONH | 0.5mM F subunit uniformly labeled 15N; 15N, 13C; 25mM phosphate buffer pH 6.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
5 | HNCO | 0.5mM F subunit uniformly labeled 15N; 15N, 13C; 25mM phosphate buffer pH 6.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
6 | HCCH-TOCSY | 0.5mM F subunit uniformly labeled 15N; 15N, 13C; 25mM phosphate buffer pH 6.5; 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
Distance constraints, Simulated annealing, Molecular dynamics, Torsion angle dynamics | Total NMR constraints 863, Torsional angle restraints 184, Hydrogen bond restraints 32 | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.1 | Guentert, P. |
2 | processing | NMRPipe | 2.3 | Delaglio, F. |
3 | collection | TopSpin | 1.3 | Bruker |
4 | data analysis | Sparky | 3.112 | Goddard, T.D. |
5 | refinement | CYANA | 2.1 | Guentert, P. |