2OUZ

Crystal Structure of Estrogen Receptor alpha-lasofoxifene complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.72950.1 M NaHEPES, 0.5 M NaCl, 6% ethylene glycol, 10-12%PEG 8000, 5mM DTT, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.448.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.306α = 90
b = 58.306β = 90
c = 275.033γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IICosmic1999-05-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1250.6494.50.073153.2519969188694241
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0787.50.6511.61

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3ERT250.641880097694.640.2020.1990.269RANDOM39.196
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.740.370.74-1.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.154
r_dihedral_angle_4_deg18.248
r_dihedral_angle_3_deg16.92
r_dihedral_angle_1_deg6.001
r_scangle_it3.528
r_scbond_it2.524
r_mcangle_it1.841
r_angle_refined_deg1.717
r_mcbond_it1.128
r_angle_other_deg0.961
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.154
r_dihedral_angle_4_deg18.248
r_dihedral_angle_3_deg16.92
r_dihedral_angle_1_deg6.001
r_scangle_it3.528
r_scbond_it2.524
r_mcangle_it1.841
r_angle_refined_deg1.717
r_mcbond_it1.128
r_angle_other_deg0.961
r_symmetry_hbond_refined0.549
r_symmetry_vdw_refined0.35
r_mcbond_other0.274
r_symmetry_vdw_other0.246
r_nbd_refined0.244
r_xyhbond_nbd_refined0.241
r_nbd_other0.185
r_nbtor_refined0.181
r_chiral_restr0.112
r_nbtor_other0.091
r_bond_refined_d0.02
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1939
Nucleic Acid Atoms
Solvent Atoms161
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing