2OPC

Structure of Melampsora lini avirulence protein, AvrL567-A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8290.0510% PEG 8000, 0.1 M imidazole, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290.05K
2VAPOR DIFFUSION, HANGING DROP7.5290.054-10% PEG 8000, 0.1 M imidazole, 12.5-17.5 mM CoCl2, pH 7.5-8.5, VAPOR DIFFUSION, HANGING DROP, temperature 290.05K

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.818α = 90
b = 52.379β = 90
c = 70.827γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV2005-04-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.435093.30.05633.72814932.137
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.4321.4680.23813.95

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.4326.4626436139399.10.198250.196890.22593RANDOM32.137
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.15-0.03-0.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.733
r_dihedral_angle_4_deg15.062
r_dihedral_angle_3_deg11.603
r_dihedral_angle_1_deg6.716
r_scangle_it3.592
r_scbond_it2.418
r_mcangle_it1.932
r_angle_refined_deg1.617
r_mcbond_it1.16
r_nbtor_refined0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.733
r_dihedral_angle_4_deg15.062
r_dihedral_angle_3_deg11.603
r_dihedral_angle_1_deg6.716
r_scangle_it3.592
r_scbond_it2.418
r_mcangle_it1.932
r_angle_refined_deg1.617
r_mcbond_it1.16
r_nbtor_refined0.31
r_nbd_refined0.228
r_symmetry_vdw_refined0.22
r_symmetry_hbond_refined0.162
r_xyhbond_nbd_refined0.136
r_chiral_restr0.111
r_bond_refined_d0.015
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms929
Nucleic Acid Atoms
Solvent Atoms190
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
SOLVEphasing