2OHF

Crystal structure of human OLA1 in complex with AMPPCP


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP827712% PEG 3350, 50 mM TRIS/HCl, 10 mM MgCl2, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.4764.55

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 141.253α = 90
b = 159.831β = 90
c = 55.129γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDMirrors2005-12-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.9764SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75099.80.08416.37.21759017590-370.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.81000.822.87.41797

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB Entries 1JAL and 1NI32.750175891758989199.80.2330.2330.230.288RANDOM50.599
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.152.81-0.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.263
r_dihedral_angle_3_deg16.622
r_dihedral_angle_4_deg14.939
r_dihedral_angle_1_deg7.013
r_scangle_it6.21
r_scbond_it4.612
r_mcangle_it2.994
r_mcbond_it2.256
r_angle_refined_deg1.438
r_angle_other_deg0.843
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.263
r_dihedral_angle_3_deg16.622
r_dihedral_angle_4_deg14.939
r_dihedral_angle_1_deg7.013
r_scangle_it6.21
r_scbond_it4.612
r_mcangle_it2.994
r_mcbond_it2.256
r_angle_refined_deg1.438
r_angle_other_deg0.843
r_mcbond_other0.462
r_nbd_refined0.239
r_symmetry_vdw_other0.234
r_symmetry_vdw_refined0.202
r_nbtor_refined0.195
r_nbd_other0.182
r_xyhbond_nbd_refined0.151
r_symmetry_hbond_refined0.103
r_nbtor_other0.09
r_chiral_restr0.075
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2639
Nucleic Acid Atoms
Solvent Atoms26
Heterogen Atoms31

Software

Software
Software NamePurpose
MAR345data collection
MOLREPphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling