X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.62910.2M Ammonium sulfate, 30% PEG4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
1.9938.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 27.103α = 90
b = 66.316β = 111.6
c = 27.154γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-10-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.933ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1522.4488.30.0433.8279579.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.151.2154.20.2984.53.52513

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1N981.1522.4427957139288.290.2010.1330.1310.165RANDOM12.723
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.080.10.01-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.452
r_dihedral_angle_4_deg18.212
r_dihedral_angle_3_deg17.681
r_dihedral_angle_1_deg15.276
r_sphericity_free15.026
r_scangle_it7.308
r_sphericity_bonded6.518
r_scbond_it6.087
r_mcangle_it4.361
r_mcbond_it3.543
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.452
r_dihedral_angle_4_deg18.212
r_dihedral_angle_3_deg17.681
r_dihedral_angle_1_deg15.276
r_sphericity_free15.026
r_scangle_it7.308
r_sphericity_bonded6.518
r_scbond_it6.087
r_mcangle_it4.361
r_mcbond_it3.543
r_rigid_bond_restr2.922
r_angle_refined_deg2.102
r_mcbond_other1.418
r_angle_other_deg1.238
r_nbd_refined0.665
r_chiral_restr0.458
r_xyhbond_nbd_refined0.451
r_symmetry_vdw_refined0.432
r_xyhbond_nbd_other0.411
r_symmetry_vdw_other0.398
r_nbd_other0.348
r_nbtor_refined0.276
r_symmetry_hbond_refined0.252
r_nbtor_other0.107
r_bond_refined_d0.027
r_gen_planes_refined0.017
r_gen_planes_other0.004
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1054
Nucleic Acid Atoms
Solvent Atoms143
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing