2O62

CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM DUF3598 FAMILY (NPUN_R4044) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.75 A RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP, NANODROP6.32770.2M NH4Cl, 20.0% PEG-3350, No Buffer pH 6.3, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.3948.55

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.21α = 90
b = 71.88β = 90
c = 132.61γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat mirror (vertical focusing)2006-11-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-1SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7529.14893.70.0839.715636124.116
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8170.40.4621.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.7529.14856308283493.940.1680.1660.208RANDOM21.992
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.08-1.18-0.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.783
r_dihedral_angle_4_deg18.369
r_dihedral_angle_3_deg12.507
r_dihedral_angle_1_deg6.706
r_scangle_it4.174
r_scbond_it2.645
r_angle_refined_deg1.641
r_mcangle_it1.636
r_mcbond_it1.059
r_angle_other_deg0.828
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.783
r_dihedral_angle_4_deg18.369
r_dihedral_angle_3_deg12.507
r_dihedral_angle_1_deg6.706
r_scangle_it4.174
r_scbond_it2.645
r_angle_refined_deg1.641
r_mcangle_it1.636
r_mcbond_it1.059
r_angle_other_deg0.828
r_symmetry_vdw_refined0.276
r_mcbond_other0.267
r_symmetry_vdw_other0.247
r_nbd_refined0.222
r_nbd_other0.204
r_xyhbond_nbd_refined0.182
r_nbtor_refined0.176
r_symmetry_hbond_refined0.158
r_chiral_restr0.102
r_nbtor_other0.084
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4225
Nucleic Acid Atoms
Solvent Atoms506
Heterogen Atoms92

Software

Software
Software NamePurpose
MolProbitymodel building
REFMACrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
SHARPphasing
SOLVEphasing