2O1V

Structure of full length GRP94 with ADP bound


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.429126-32% v/v PEG400, 150-225mM MgCl2, and 0.1M Bis-tris propane, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.6253.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.08α = 90
b = 108.85β = 90
c = 148.98γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102006-06-09MSINGLE WAVELENGTH
21x-ray100CCDADSC QUANTUM 2102006-06-09MMAD
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.10.97950ALS8.2.1
2SYNCHROTRONALS BEAMLINE 8.2.10.97950, 0.97960, 0.97180ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.455099.60.06415.64.85988359644-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.452.597.70.758243474

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.45205988356551297099.590.250150.247560.29947RANDOM30.563
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.26-0.97-2.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.041
r_dihedral_angle_4_deg11.161
r_dihedral_angle_3_deg10.648
r_dihedral_angle_1_deg2.474
r_scangle_it1.506
r_angle_refined_deg1.356
r_scbond_it0.96
r_mcangle_it0.712
r_mcbond_it0.404
r_nbtor_refined0.311
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.041
r_dihedral_angle_4_deg11.161
r_dihedral_angle_3_deg10.648
r_dihedral_angle_1_deg2.474
r_scangle_it1.506
r_angle_refined_deg1.356
r_scbond_it0.96
r_mcangle_it0.712
r_mcbond_it0.404
r_nbtor_refined0.311
r_metal_ion_refined0.297
r_xyhbond_nbd_refined0.201
r_symmetry_hbond_refined0.199
r_nbd_refined0.174
r_symmetry_vdw_refined0.156
r_chiral_restr0.094
r_bond_refined_d0.009
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9216
Nucleic Acid Atoms
Solvent Atoms260
Heterogen Atoms58

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
XDSdata reduction
XDSdata scaling
SHELXCDphasing
SHELXEmodel building