2O1A

Crystal structure of iron-regulated surface determinant protein A from Staphylococcus aureus- targeted domain 47...188


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP3.50.1 M Citrate, 2.0 M Ammonium sulfate, pH 3.5, VAPOR DIFFUSION, SITTING DROP
Crystal Properties
Matthews coefficientSolvent content
3.0159.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.186α = 90
b = 82.141β = 90
c = 91.279γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-08-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-IDAPS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.65099.70.0846.272620626135-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6698.40.4340.04535.72534

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.641.072471924719132499.290.168690.168690.166990.20098RANDOM20.375
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.170.22-0.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.544
r_dihedral_angle_3_deg13.665
r_dihedral_angle_4_deg12.531
r_dihedral_angle_1_deg8.237
r_scangle_it4.915
r_scbond_it3.636
r_mcangle_it2.391
r_mcbond_it1.683
r_angle_refined_deg1.5
r_nbtor_refined0.303
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.544
r_dihedral_angle_3_deg13.665
r_dihedral_angle_4_deg12.531
r_dihedral_angle_1_deg8.237
r_scangle_it4.915
r_scbond_it3.636
r_mcangle_it2.391
r_mcbond_it1.683
r_angle_refined_deg1.5
r_nbtor_refined0.303
r_nbd_refined0.221
r_symmetry_vdw_refined0.212
r_xyhbond_nbd_refined0.166
r_chiral_restr0.116
r_symmetry_hbond_refined0.111
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1082
Nucleic Acid Atoms
Solvent Atoms130
Heterogen Atoms9

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing