2NZ0

Crystal structure of potassium channel Kv4.3 in complex with its regulatory subunit KChIP1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP10.52962.0 M NaH2PO4/K2HPO4, 0.2 M Li2SO4 and 0.1 M CAPS, pH 10.5, VAPOR DIFFUSION, HANGING DROP, temperature 296.0K
Crystal Properties
Matthews coefficientSolvent content
2.9157.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 112.186α = 90
b = 112.213β = 90
c = 141.051γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plate2005-11-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE F1CHESSF1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.29997.40.0620.06210.85.9150651468021
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.23.31980.1460.4891.86

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.2301354713587111497.920.264580.260820.31015RANDOM124.965
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.392.39-5.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.018
r_dihedral_angle_3_deg15.786
r_dihedral_angle_4_deg12.416
r_dihedral_angle_1_deg3.799
r_scangle_it1.397
r_angle_refined_deg0.879
r_scbond_it0.822
r_mcangle_it0.791
r_mcbond_it0.443
r_symmetry_vdw_refined0.357
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.018
r_dihedral_angle_3_deg15.786
r_dihedral_angle_4_deg12.416
r_dihedral_angle_1_deg3.799
r_scangle_it1.397
r_angle_refined_deg0.879
r_scbond_it0.822
r_mcangle_it0.791
r_mcbond_it0.443
r_symmetry_vdw_refined0.357
r_symmetry_hbond_refined0.33
r_nbtor_refined0.303
r_nbd_refined0.174
r_xyhbond_nbd_refined0.112
r_chiral_restr0.06
r_bond_refined_d0.007
r_gen_planes_refined0.002
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5078
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
AMoREphasing