X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529810%-15% PEG 6000/8000, 0.2-0.5 M calcium acetate, 0.1 M cacodylic acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.0960.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.989α = 90
b = 98.598β = 90
c = 157.858γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-07-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26CNSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75099.93291832916322

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.749.392918329163155799.930.2050.2050.2020.261RANDOM33.519
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.2-4.35-0.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.857
r_scangle_it5.459
r_scbond_it3.103
r_mcangle_it2.183
r_angle_refined_deg1.899
r_mcbond_it1.132
r_angle_other_deg0.958
r_nbd_other0.241
r_nbd_refined0.236
r_symmetry_vdw_other0.235
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.857
r_scangle_it5.459
r_scbond_it3.103
r_mcangle_it2.183
r_angle_refined_deg1.899
r_mcbond_it1.132
r_angle_other_deg0.958
r_nbd_other0.241
r_nbd_refined0.236
r_symmetry_vdw_other0.235
r_symmetry_hbond_refined0.207
r_symmetry_vdw_refined0.183
r_xyhbond_nbd_refined0.159
r_chiral_restr0.102
r_nbtor_other0.096
r_bond_refined_d0.019
r_gen_planes_refined0.007
r_gen_planes_other0.004
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6084
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction