2MYW
Solution structure of M. oryzae protein AVR-PIA
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-15N] AVR-Pia | 90% H2O/10% D2O | 0.15 | 5.4 | ambient | 305 | |
2 | 2D 1H-15N HSQC | 1 mM [U-13C; U-15N] AVR-Pia | 90% H2O/10% D2O | 0.15 | 5.4 | ambient | 305 | |
3 | 3D HNCO | 1 mM [U-13C; U-15N] AVR-Pia | 90% H2O/10% D2O | 0.15 | 5.4 | ambient | 305 | |
4 | 3D HNCA | 1 mM [U-13C; U-15N] AVR-Pia | 90% H2O/10% D2O | 0.15 | 5.4 | ambient | 305 | |
5 | 3D HN(COCA)CB | 1 mM [U-13C; U-15N] AVR-Pia | 90% H2O/10% D2O | 0.15 | 5.4 | ambient | 305 | |
6 | 3D HN(CO)CA | 1 mM [U-13C; U-15N] AVR-Pia | 90% H2O/10% D2O | 0.15 | 5.4 | ambient | 305 | |
7 | 3D HNCACB | 1 mM [U-13C; U-15N] AVR-Pia | 90% H2O/10% D2O | 0.15 | 5.4 | ambient | 305 | |
8 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] AVR-Pia | 90% H2O/10% D2O | 0.15 | 5.4 | ambient | 305 | |
9 | 3D 1H-15N TOCSY | 1 mM [U-13C; U-15N] AVR-Pia | 90% H2O/10% D2O | 0.15 | 5.4 | ambient | 305 | |
10 | 2D 1H-1H NOESY | 1 mM AVR-Pia | 100% D2O | 0.15 | 5.4 | ambient | 305 | |
11 | 2D 1H-1H TOCSY | 1 mM AVR-Pia | 100% D2O | 0.15 | 5.4 | ambient | 305 | |
12 | 2D DQF-COSY | 1 mM AVR-Pia | 100% D2O | 0.15 | 5.4 | ambient | 305 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
2 | Bruker | AVANCE | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, molecular dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker Biospin |
2 | processing | TopSpin | 2.1 | Bruker Biospin |
3 | data analysis | CCPNMR | CCPN | |
4 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
5 | data analysis | TALOS+ | 1.2 | Cornilescu, Delaglio and Bax |
6 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
7 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |