2MWJ

Solution structure of Family 1 Carbohydrate-Binding Module from Trichoderma reesei Cel7A with O-mannose residues at Thr1 and Ser3


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H TOCSY1.7 mg CBM_2M90% H2O/10% D2O305ambient300
22D DQF-COSY1.7 mg CBM_2M90% H2O/10% D2O305ambient300
32D 1H-1H NOESY1.7 mg CBM_2M90% H2O/10% D2O305ambient300
42D 1H-1H TOCSY1.7 mg CBM_2M100% D2O305ambient300
52D DQF-COSY1.7 mg CBM_2M90% H2O/10% D2O305ambient288
62D 1H-1H NOESY1.7 mg CBM_2M90% H2O/10% D2O305ambient288
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealing, molecular dynamics30 conformers initially calculated were refined with 4 rounds of SA, Final selection of structures for submission was done based on the behavior of the models during the 200 ns trajectories: only models which stayed within 3 RMSD of the starting structures were selected.TopSpin
NMR Ensemble Information
Conformer Selection Criteriamolecular dynamics
Conformers Calculated Total Number30
Conformers Submitted Total Number10
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.2Bruker Biospin
2processingTopSpin3.2Bruker Biospin
3data analysisTopSpin3.2Bruker Biospin
4chemical shift assignmentTopSpin3.2Bruker Biospin
5peak pickingTopSpin3.2Bruker Biospin
6refinementXPLOR-NIHSchwieters, Kuszewski, Tjandra and Clore
7refinementCHARMM_DOMDECBrooks, Bruccoleri, Olafson, States, Swaminathan, and Karplus